(This page is where the most up to date version of VTBuilder will be maintained by the developer, me. The old site http://www.lstmed.ac.uk/vtbuilder, although still active, is currently unsupported.)

VTBuilder is an open source and freely available tool for constructing non-chimeric transcripts from read data that has been sequenced from sources containing isoform complexity.

Further details are available within the manuscript.

Download and Installation
I am currently updating the software, but in the meantime a jar file is available here.

Unzip this file and execute the jar file from the correct directory location using:
java -jar VTBuilder.jar

Some sample reads, as described in the manuscript, are available here.

A user guide is here.

Source Code
Source code is available from my googlecode project.

Figure 1: Main display area of VTBuilder